PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA4709
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 507aa    MW: 57329.3 Da    PI: 8.6533
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA4709genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like105.72.5e-33137191155
                   G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               kprl+Wtp+LH+rF+eav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl
  Tp57577_TGAC_v2_mRNA4709 137 KPRLKWTPDLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 191
                               79****************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.489134194IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.8E-31135192IPR009057Homeodomain-like
SuperFamilySSF466892.69E-16136192IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-22137192IPR006447Myb domain, plants
PfamPF002493.2E-9139190IPR001005SANT/Myb domain
PfamPF143791.2E-24269316IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 507 aa     Download sequence    Send to blast
MNACMSVSVV ILIIIIIIII IIIIIIIIII IIIIIISTTI IRIYKFMSPV TGWDISTILE  60
VPCLIILFLV FEVVERAYFS FKGTVFRKRS NMYHHHQHQG KNIHSSSRMS IPSERHMFLQ  120
TGNGSSDSGL VLSTDAKPRL KWTPDLHARF IEAVNQLGGA DKATPKTVMK LMGIPGLTLY  180
HLKSHLQKYR LSKNLHGQSN SNVTHKLTTH SASVTDEXXX XXXXXXXXXX XXXXXXXXXD  240
YTLHVIFFGM NILSLRFYAN FHVPFGRDIH INEALQMQIE VQRRLNEQLE VQRHLQLRIE  300
AQGKYLQSVL EKAQETLGRQ NLGIVGLEAA KVQLSELVSK VSSQCLNSTF SEMKELQGFC  360
PPNDGSMDSS CLTSSDRSQK EQEIIQNGGF GLRHFNNNNH ELAGSVQNIR NNEVLKWCVD  420
EVKKNSTNFL TPLGKNNDLE RNHGNLSMNI GVETRTETIK SVEDNNKMQQ SSNYFSASRL  480
DLNSGGDHNE GATNCKQLDL NRFSWN*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00331DAPTransfer from AT3G04030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1469491e-158BT146949.1 Medicago truncatula clone JCVI-FLMt-19I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596817.10.0myb-like transcription factor family protein
TrEMBLG7ITS90.0G7ITS9_MEDTR; Myb-like transcription factor family protein
STRINGGLYMA12G31020.11e-175(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38523163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04030.31e-117G2-like family protein